Variant report

Variant	rs12882872
Chromosome Location	chr14:79768097-79768098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11627269	0.80[AMR][1000 genomes]
rs11628045	0.85[EUR][1000 genomes]
rs12432262	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12882688	0.85[AMR][1000 genomes]
rs12884217	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12888606	0.80[AMR][1000 genomes]
rs1868635	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2218786	0.82[AMR][1000 genomes]
rs4899738	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56711325	0.82[AMR][1000 genomes]
rs7492515	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79756200-79768600	Weak transcription	Aorta	Aorta
2	chr14:79760400-79770400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr14:79762800-79770800	Weak transcription	Colon Smooth Muscle	Colon
4	chr14:79765800-79773000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:79766600-79768400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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