Variant report

Variant	rs4899738
Chromosome Location	chr14:79759987-79759988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11627269	0.87[CEU][hapmap];0.86[CHB][hapmap];0.85[TSI][hapmap]
rs11628045	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1184263	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12432262	0.87[CEU][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs12882688	0.83[CEU][hapmap]
rs12882872	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12884217	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12888606	0.81[AMR][1000 genomes]
rs12895906	0.82[CHD][hapmap]
rs1868635	0.91[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs2218786	0.85[AMR][1000 genomes]
rs2219846	0.81[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap]
rs2370974	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4359363	0.93[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4899737	0.87[CEU][hapmap];0.81[CHB][hapmap];0.83[TSI][hapmap]
rs56711325	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61995413	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6574505	1.00[ASW][hapmap];0.88[CHD][hapmap];0.91[MEX][hapmap];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7153957	0.87[CEU][hapmap];0.86[CHB][hapmap]
rs7161543	0.87[CEU][hapmap];0.85[CHB][hapmap];0.89[TSI][hapmap]
rs7492515	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8014036	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79750200-79760400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr14:79756200-79768600	Weak transcription	Aorta	Aorta
3	chr14:79756600-79760000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:79759200-79760000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:79759200-79760400	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr14:79759400-79761200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:79759400-79762800	Enhancers	Colon Smooth Muscle	Colon
8	chr14:79759600-79760000	Flanking Active TSS	Brain Substantia Nigra	brain
9	chr14:79759600-79760200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr14:79759600-79760400	Enhancers	Brain Germinal Matrix	brain
11	chr14:79759600-79760600	Enhancers	Fetal Brain Male	brain
12	chr14:79759600-79761600	Enhancers	Rectal Smooth Muscle	rectum
13	chr14:79759800-79760000	Flanking Active TSS	Brain Anterior Caudate	brain
14	chr14:79759800-79760200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr14:79759800-79760200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:79759800-79760200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr14:79759800-79760200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr14:79759800-79760200	Flanking Active TSS	Brain Angular Gyrus	brain
19	chr14:79759800-79760200	Flanking Active TSS	Brain Cingulate Gyrus	brain
20	chr14:79759800-79760200	Active TSS	Brain Hippocampus Middle	brain
21	chr14:79759800-79760200	Enhancers	Fetal Kidney	kidney
22	chr14:79759800-79760200	Enhancers	Lung	lung
23	chr14:79759800-79760200	Active TSS	Stomach Smooth Muscle	stomach
24	chr14:79759800-79760400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr14:79759800-79760400	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr14:79759800-79760400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr14:79759800-79760400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr14:79759800-79760600	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr14:79759800-79760600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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