Variant report

Variant	rs12895906
Chromosome Location	chr14:79837030-79837031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10146833	0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10498537	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625994	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12590794	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12884217	0.84[CHD][hapmap]
rs12888473	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12888937	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12889183	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12889273	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12894140	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17598373	0.84[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs2122434	0.92[CEU][hapmap];0.83[CHB][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2167150	0.92[CEU][hapmap];0.83[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2219846	0.82[CHD][hapmap]
rs4359363	0.84[CHD][hapmap]
rs4899738	0.82[CHD][hapmap]
rs4903845	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4903846	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6574505	0.81[CHD][hapmap]
rs6574506	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7492987	0.84[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8006756	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv902111	chr14:79807197-79890677	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79834600-79837600	Enhancers	Colon Smooth Muscle	Colon
2	chr14:79835200-79839400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr14:79836600-79840800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:79836600-79841800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:79836600-79843000	Weak transcription	Rectal Smooth Muscle	rectum

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