Variant report

Variant	rs7492987
Chromosome Location	chr14:79817862-79817863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10146833	0.92[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10498537	0.88[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11625994	0.91[EUR][1000 genomes]
rs12590794	0.91[EUR][1000 genomes]
rs12888473	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12888937	0.91[EUR][1000 genomes]
rs12889183	0.91[EUR][1000 genomes]
rs12889273	0.91[EUR][1000 genomes]
rs12894140	0.91[EUR][1000 genomes]
rs12895906	0.84[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12896073	0.92[EUR][1000 genomes]
rs17598373	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2122434	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2167150	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs4903845	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4903846	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6574506	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8006756	0.89[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv902111	chr14:79807197-79890677	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79792200-79825600	Weak transcription	Aorta	Aorta
2	chr14:79817000-79818800	Enhancers	Fetal Stomach	stomach
3	chr14:79817400-79820800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr14:79817600-79819000	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr14:79817600-79820400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:79817800-79818800	Enhancers	Brain Substantia Nigra	brain
7	chr14:79817800-79819200	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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