Variant report

Variant	rs7492515
Chromosome Location	chr14:79755176-79755177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11627269	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs11628045	0.88[EUR][1000 genomes]
rs1184263	0.90[CEU][hapmap]
rs12432262	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12882688	0.91[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12882872	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12884217	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12888606	0.82[AMR][1000 genomes]
rs1868635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2219846	0.88[CEU][hapmap]
rs4359363	0.88[CEU][hapmap]
rs4899737	0.88[CEU][hapmap]
rs4899738	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56711325	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7153957	0.88[CEU][hapmap]
rs7161543	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79747800-79759800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:79749400-79756400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:79750000-79756200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:79750200-79760400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr14:79751400-79759600	Weak transcription	Brain Germinal Matrix	brain
6	chr14:79753800-79756200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:79754200-79755200	Weak transcription	Aorta	Aorta
8	chr14:79754400-79759600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:79754800-79758600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr14:79754800-79759400	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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