Variant report

Variant	rs7494074
Chromosome Location	chr14:79720140-79720141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs17109013	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109025	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109036	0.85[AMR][1000 genomes]
rs1868636	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2122435	1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs2197994	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2218785	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2887896	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2887910	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs6574503	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6574504	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7153825	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153826	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs715697	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7159701	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs7159954	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161108	1.00[ASN][1000 genomes]
rs7161402	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74067962	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74067963	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74067965	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74067967	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74067968	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74067999	0.97[ASN][1000 genomes]
rs74069726	0.97[ASN][1000 genomes]
rs74069728	0.97[ASN][1000 genomes]
rs74069736	0.84[ASN][1000 genomes]
rs8005044	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs8005937	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005957	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007640	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014036	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8014560	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1047433	chr14:79673222-79723628	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv528346	chr14:79683956-79747251	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1052541	chr14:79689336-79723628	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79715000-79720200	Weak transcription	HSMM	muscle
2	chr14:79715000-79720200	Weak transcription	NH-A	brain
3	chr14:79719800-79720200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:79720000-79721400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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