Variant report

Variant	rs74074045
Chromosome Location	chr1:47712430-47712431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47705490..47714722-chr1:47717231..47723503,17	K562	blood:
2	chr1:47710711..47713043-chr1:47798786..47800881,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162368	Chromatin interaction

rs_ID	r²[population]
rs11211487	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11211494	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11211509	0.85[AMR][1000 genomes]
rs11802603	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12061032	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12092248	0.85[AMR][1000 genomes]
rs12239246	0.85[AMR][1000 genomes]
rs13374419	0.85[AMR][1000 genomes]
rs57573975	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59216068	0.85[AMR][1000 genomes]
rs61243812	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6588095	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6660505	0.85[AMR][1000 genomes]
rs7512955	0.85[AMR][1000 genomes]
rs7555179	0.85[AMR][1000 genomes]
rs9988633	0.85[AMR][1000 genomes]

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47705200-47766400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:47705600-47766400	Weak transcription	Primary T cells from cord blood	blood
3	chr1:47705800-47714800	Weak transcription	Fetal Thymus	thymus
4	chr1:47707600-47716600	Weak transcription	Hela-S3	cervix
5	chr1:47707600-47722800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:47708000-47715200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr1:47709800-47714600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:47709800-47716000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:47709800-47725400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:47709800-47726000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:47709800-47745000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:47710000-47716400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:47710000-47716600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:47710000-47716600	Weak transcription	HUVEC	blood vessel
15	chr1:47710400-47716600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr1:47711000-47715200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:47711000-47727800	Weak transcription	A549	lung
18	chr1:47711200-47715600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:47711200-47716600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:47711400-47713400	Weak transcription	K562	blood
21	chr1:47711400-47716200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr1:47711800-47715200	Weak transcription	Thymus	Thymus
23	chr1:47711800-47716600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr1:47712200-47718600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr1:47712400-47714800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:47712400-47716400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr1:47712400-47720400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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