Variant report

Variant	rs74074062
Chromosome Location	chr1:47745644-47745645
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:47742760..47745758-chr1:47776892..47779281,2	K562	blood:
2	chr1:47644268..47646173-chr1:47744505..47746326,2	K562	blood:
3	chr1:47744627..47746467-chr1:47754949..47756563,2	K562	blood:
4	chr1:47695487..47699315-chr1:47745491..47748993,3	K562	blood:

Variant related genes	Relation type
ENSG00000162367	Chromatin interaction
ENSG00000225506	Chromatin interaction
ENSG00000123473	Chromatin interaction
ENSG00000224805	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1022458	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3122606	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3125637	0.90[AFR][1000 genomes]
rs57545250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074054	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9436433	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9436871	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9436872	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9436873	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9436874	0.90[AFR][1000 genomes]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47705200-47766400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:47705600-47766400	Weak transcription	Primary T cells from cord blood	blood
3	chr1:47713200-47745800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:47713800-47745800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:47714400-47779200	Weak transcription	Small Intestine	intestine
6	chr1:47714600-47745800	Weak transcription	Primary B cells from cord blood	blood
7	chr1:47714600-47778400	Weak transcription	Fetal Heart	heart
8	chr1:47714800-47746000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:47715600-47749200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:47716600-47772600	Strong transcription	Dnd41	blood
11	chr1:47717000-47745800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:47718200-47746000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:47719800-47745800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr1:47720400-47757000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:47720600-47766400	Weak transcription	Brain Germinal Matrix	brain
16	chr1:47721000-47749000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr1:47721600-47766800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr1:47723400-47772400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr1:47726200-47745800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr1:47727000-47745800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:47728600-47755200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr1:47729000-47767000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr1:47729200-47746000	Weak transcription	Placenta	Placenta
24	chr1:47730400-47770200	Weak transcription	Colonic Mucosa	Colon
25	chr1:47730800-47755000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr1:47730800-47766400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr1:47731400-47778000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:47735200-47754000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr1:47735400-47779000	Weak transcription	Esophagus	oesophagus
30	chr1:47735800-47745800	Weak transcription	NH-A	brain
31	chr1:47736600-47745800	Weak transcription	Osteobl	bone
32	chr1:47738000-47745800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr1:47738000-47745800	Weak transcription	HMEC	breast
34	chr1:47738400-47749000	Weak transcription	Fetal Stomach	stomach
35	chr1:47739400-47745800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr1:47739600-47747600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr1:47740400-47757200	Weak transcription	Gastric	stomach
38	chr1:47741200-47747200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr1:47741400-47771400	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr1:47741600-47754000	Weak transcription	Primary B cells from peripheral blood	blood
41	chr1:47741600-47770800	Strong transcription	Fetal Thymus	thymus
42	chr1:47741800-47745800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr1:47741800-47748600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr1:47741800-47770800	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr1:47742200-47751000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr1:47742600-47773000	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr1:47742600-47773000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr1:47742800-47751600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr1:47742800-47757000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr1:47742800-47763800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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