Variant report

Variant	rs9436874
Chromosome Location	chr1:47794592-47794593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47779023..47781686-chr1:47794382..47795947,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123473	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1022458	0.85[AFR][1000 genomes]
rs11804846	1.00[MEX][hapmap]
rs2622918	1.00[MEX][hapmap]
rs3122606	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs3125637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57545250	0.90[AFR][1000 genomes]
rs74074054	0.88[AFR][1000 genomes]
rs74074061	0.90[AFR][1000 genomes]
rs74074062	0.90[AFR][1000 genomes]
rs9436433	1.00[AFR][1000 genomes]
rs9436871	1.00[AFR][1000 genomes]
rs9436872	1.00[AFR][1000 genomes]
rs9436873	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390574	chr1:47778981-47803091	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47780200-47798400	Weak transcription	Spleen	Spleen
2	chr1:47780600-47798000	Weak transcription	HSMMtube	muscle
3	chr1:47780800-47797800	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:47789800-47796200	Weak transcription	K562	blood
5	chr1:47790200-47797400	Weak transcription	Fetal Intestine Large	intestine
6	chr1:47790600-47797000	Weak transcription	Pancreas	Pancrea
7	chr1:47790600-47797800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:47791800-47797600	Weak transcription	Fetal Intestine Small	intestine
9	chr1:47791800-47798200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:47792400-47797600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr1:47792400-47797800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr1:47792600-47795000	Weak transcription	Fetal Stomach	stomach
13	chr1:47792600-47798000	Weak transcription	Brain Hippocampus Middle	brain
14	chr1:47792600-47798400	Weak transcription	Primary T cells from cord blood	blood
15	chr1:47792800-47798600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr1:47793200-47797600	Weak transcription	Brain Germinal Matrix	brain
17	chr1:47793200-47797800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:47793400-47796600	Weak transcription	Esophagus	oesophagus
19	chr1:47793600-47797400	Weak transcription	Fetal Brain Female	brain
20	chr1:47793600-47798000	Weak transcription	Left Ventricle	heart
21	chr1:47794000-47798200	Weak transcription	Ovary	ovary
22	chr1:47794200-47794800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:47794200-47797800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr1:47794200-47798000	Weak transcription	Liver	Liver
25	chr1:47794400-47795000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr1:47794400-47795200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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