Variant report

Variant	rs74074264
Chromosome Location	chr1:47878168-47878169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2820985	1.00[AMR][1000 genomes]
rs57434065	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074048	1.00[AMR][1000 genomes]
rs74074255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9436431	1.00[AMR][1000 genomes]
rs9436435	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871961	chr1:47875627-47912628	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47873800-47879200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:47874400-47878400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:47875600-47878200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:47877400-47879000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:47877600-47878200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:47877800-47878200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:47877800-47878600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:47877800-47878600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:47878000-47879000	Enhancers	GM12878-XiMat	blood
10	chr1:47878000-47882000	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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