Variant report

Variant	rs9436435
Chromosome Location	chr1:47796879-47796880
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:47652463..47655353-chr1:47795985..47798380,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2820985	1.00[AMR][1000 genomes]
rs57434065	1.00[AMR][1000 genomes]
rs74074048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074255	1.00[AMR][1000 genomes]
rs74074262	1.00[AMR][1000 genomes]
rs74074264	1.00[AMR][1000 genomes]
rs9436431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390574	chr1:47778981-47803091	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47780200-47798400	Weak transcription	Spleen	Spleen
2	chr1:47780600-47798000	Weak transcription	HSMMtube	muscle
3	chr1:47780800-47797800	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:47790200-47797400	Weak transcription	Fetal Intestine Large	intestine
5	chr1:47790600-47797000	Weak transcription	Pancreas	Pancrea
6	chr1:47790600-47797800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr1:47791800-47797600	Weak transcription	Fetal Intestine Small	intestine
8	chr1:47791800-47798200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:47792400-47797600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr1:47792400-47797800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:47792600-47798000	Weak transcription	Brain Hippocampus Middle	brain
12	chr1:47792600-47798400	Weak transcription	Primary T cells from cord blood	blood
13	chr1:47792800-47798600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr1:47793200-47797600	Weak transcription	Brain Germinal Matrix	brain
15	chr1:47793200-47797800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:47793600-47797400	Weak transcription	Fetal Brain Female	brain
17	chr1:47793600-47798000	Weak transcription	Left Ventricle	heart
18	chr1:47794000-47798200	Weak transcription	Ovary	ovary
19	chr1:47794200-47797800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr1:47794200-47798000	Weak transcription	Liver	Liver
21	chr1:47794600-47798000	Weak transcription	Colon Smooth Muscle	Colon
22	chr1:47794800-47798000	Weak transcription	Fetal Brain Male	brain
23	chr1:47795200-47797800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr1:47795200-47798200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr1:47795200-47798200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr1:47795400-47797400	Weak transcription	Fetal Heart	heart
27	chr1:47795400-47797800	Weak transcription	Fetal Stomach	stomach
28	chr1:47795600-47798600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:47796000-47798200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr1:47796200-47797000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr1:47796200-47798200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr1:47796400-47797600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:47796600-47797600	Weak transcription	K562	blood
34	chr1:47796600-47798000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr1:47796600-47798600	Enhancers	Esophagus	oesophagus

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