Variant report

Variant	rs74074536
Chromosome Location	chr1:56291802-56291803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55717231	0.88[AFR][1000 genomes]
rs55851855	1.00[AFR][1000 genomes]
rs74072514	0.88[AFR][1000 genomes]
rs74072518	0.88[AFR][1000 genomes]
rs74072529	0.88[AFR][1000 genomes]
rs74072531	0.88[AFR][1000 genomes]
rs74074534	1.00[AFR][1000 genomes]
rs74074548	1.00[AFR][1000 genomes]
rs74074553	0.88[AFR][1000 genomes]
rs74074554	0.88[AFR][1000 genomes]
rs74074558	0.88[AFR][1000 genomes]
rs74074572	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	nsv1002958	chr1:56278696-56295112	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56283000-56293000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:56283200-56292400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56288000-56292000	Enhancers	Fetal Lung	lung
4	chr1:56289400-56292800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:56289600-56292000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:56289600-56292000	Weak transcription	Fetal Stomach	stomach
7	chr1:56289600-56292400	Weak transcription	Osteobl	bone
8	chr1:56289800-56292000	Weak transcription	HSMMtube	muscle
9	chr1:56289800-56292200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:56289800-56292400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:56289800-56292600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:56289800-56293000	Weak transcription	NH-A	brain
13	chr1:56290800-56293000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr1:56290800-56293800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:56290800-56294000	Enhancers	NHDF-Ad	bronchial
16	chr1:56290800-56294200	Enhancers	NHLF	lung
17	chr1:56291000-56292600	Enhancers	Colon Smooth Muscle	Colon
18	chr1:56291200-56294200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:56291200-56294400	Enhancers	Placenta	Placenta
20	chr1:56291400-56292000	Weak transcription	Fetal Kidney	kidney
21	chr1:56291400-56293800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:56291600-56294600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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