Variant report
| Variant | rs74074558 |
|---|---|
| Chromosome Location | chr1:56309970-56309971 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:56304116..56306926-chr1:56309127..56312420,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs12033494 | 1.00[EUR][1000 genomes] |
| rs17112799 | 1.00[EUR][1000 genomes] |
| rs55717231 | 1.00[AFR][1000 genomes] |
| rs55756946 | 1.00[EUR][1000 genomes] |
| rs55851855 | 0.88[AFR][1000 genomes] |
| rs55887759 | 1.00[EUR][1000 genomes] |
| rs56148162 | 1.00[EUR][1000 genomes] |
| rs57076970 | 0.81[AFR][1000 genomes] |
| rs58590950 | 1.00[EUR][1000 genomes] |
| rs59376992 | 1.00[EUR][1000 genomes] |
| rs59529055 | 1.00[EUR][1000 genomes] |
| rs59552930 | 1.00[EUR][1000 genomes] |
| rs60518072 | 1.00[EUR][1000 genomes] |
| rs74072513 | 1.00[EUR][1000 genomes] |
| rs74072514 | 1.00[AFR][1000 genomes] |
| rs74072517 | 0.81[AFR][1000 genomes] |
| rs74072518 | 1.00[AFR][1000 genomes] |
| rs74072529 | 1.00[AFR][1000 genomes] |
| rs74072531 | 1.00[AFR][1000 genomes] |
| rs74074534 | 0.88[AFR][1000 genomes] |
| rs74074536 | 0.88[AFR][1000 genomes] |
| rs74074548 | 0.88[AFR][1000 genomes] |
| rs74074553 | 1.00[AFR][1000 genomes] |
| rs74074554 | 1.00[AFR][1000 genomes] |
| rs74074555 | 0.89[AFR][1000 genomes] |
| rs74074571 | 1.00[EUR][1000 genomes] |
| rs74074572 | 0.94[AFR][1000 genomes] |
| rs74074575 | 1.00[EUR][1000 genomes] |
| rs74074577 | 1.00[EUR][1000 genomes] |
| rs74074579 | 1.00[EUR][1000 genomes] |
| rs74074580 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829926 | chr1:56188492-56360745 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:56295200-56320400 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 2 | chr1:56300800-56310800 | Weak transcription | Fetal Lung | lung |
