Variant report

Variant	rs59529055
Chromosome Location	chr1:56305583-56305584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12033494	1.00[EUR][1000 genomes]
rs17112799	1.00[EUR][1000 genomes]
rs55756946	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55887759	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56148162	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58186426	0.96[AFR][1000 genomes]
rs58590950	1.00[EUR][1000 genomes]
rs58685947	0.80[AFR][1000 genomes]
rs59376992	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59552930	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60518072	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74072513	1.00[EUR][1000 genomes]
rs74074556	1.00[AFR][1000 genomes]
rs74074558	1.00[EUR][1000 genomes]
rs74074571	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74074575	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74074577	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74074579	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74074580	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56295200-56320400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:56300800-56310800	Weak transcription	Fetal Lung	lung
3	chr1:56301800-56306000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:56302000-56305600	Weak transcription	Fetal Stomach	stomach
5	chr1:56305400-56306800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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