Variant report

Variant	rs58186426
Chromosome Location	chr1:56310427-56310428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56304116..56306926-chr1:56309127..56312420,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10493181	0.96[AMR][1000 genomes]
rs12562891	0.96[AMR][1000 genomes]
rs12563373	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565060	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12566744	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12569071	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17112890	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17112921	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17113044	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17113092	1.00[AMR][1000 genomes]
rs34731939	0.89[AMR][1000 genomes]
rs3795354	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4313435	0.95[ASN][1000 genomes]
rs4494179	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5014478	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55756946	0.96[AFR][1000 genomes]
rs55887759	0.85[AFR][1000 genomes]
rs56148162	0.82[AFR][1000 genomes]
rs59376992	0.96[AFR][1000 genomes]
rs59529055	0.96[AFR][1000 genomes]
rs59552930	0.82[AFR][1000 genomes]
rs60518072	0.82[AFR][1000 genomes]
rs6657176	0.95[ASN][1000 genomes]
rs74072547	0.93[AMR][1000 genomes]
rs74074547	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74074556	0.96[AFR][1000 genomes]
rs74074557	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74074575	0.82[AFR][1000 genomes]
rs74074577	0.82[AFR][1000 genomes]
rs74074579	0.82[AFR][1000 genomes]
rs74074580	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56295200-56320400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:56300800-56310800	Weak transcription	Fetal Lung	lung
3	chr1:56310200-56310600	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr1:56310200-56310600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr1:56310400-56321200	Weak transcription	Psoas Muscle	Psoas

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