Variant report

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10493181	0.86[AMR][1000 genomes]
rs12562891	0.86[AMR][1000 genomes]
rs12563373	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12565060	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12566744	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12569071	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17112890	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17112921	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17113044	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17113092	0.90[AMR][1000 genomes]
rs3795354	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4313435	0.84[ASN][1000 genomes]
rs4494179	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5014478	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58186426	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58590950	0.91[AFR][1000 genomes]
rs6657176	0.84[ASN][1000 genomes]
rs74072547	0.83[AMR][1000 genomes]
rs74074557	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	nsv1002958	chr1:56278696-56295112	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56290800-56294000	Enhancers	NHDF-Ad	bronchial
2	chr1:56290800-56294200	Enhancers	NHLF	lung
3	chr1:56291200-56294200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56291200-56294400	Enhancers	Placenta	Placenta
5	chr1:56291600-56294600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:56292000-56294000	Enhancers	Fetal Stomach	stomach
7	chr1:56292000-56294400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:56292000-56294400	Enhancers	Hela-S3	cervix
9	chr1:56292000-56296400	Weak transcription	Fetal Lung	lung
10	chr1:56292400-56294000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:56292400-56299400	Weak transcription	Fetal Kidney	kidney
12	chr1:56292800-56294200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:56293000-56294200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr1:56293400-56294800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:56293800-56298600	Weak transcription	Colon Smooth Muscle	Colon
16	chr1:56293800-56298600	Weak transcription	Ovary	ovary
17	chr1:56293800-56298800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:56293800-56298800	Weak transcription	Osteobl	bone
19	chr1:56293800-56299000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr1:56293800-56299000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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