Variant report
| Variant | rs12563373 |
|---|---|
| Chromosome Location | chr1:56312695-56312696 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10493181 | 0.93[AMR][1000 genomes] |
| rs11799716 | 0.81[AFR][1000 genomes] |
| rs11801875 | 0.81[AFR][1000 genomes] |
| rs11803064 | 0.81[AFR][1000 genomes] |
| rs11804311 | 0.81[AFR][1000 genomes] |
| rs11805792 | 0.81[AFR][1000 genomes] |
| rs11808434 | 0.81[AFR][1000 genomes] |
| rs11809461 | 0.81[AFR][1000 genomes] |
| rs12562891 | 0.93[AMR][1000 genomes] |
| rs12565060 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12566744 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12569071 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17112890 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs17112921 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17113044 | 0.96[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17113092 | 0.96[AMR][1000 genomes] |
| rs34731939 | 0.86[AMR][1000 genomes] |
| rs3795354 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4313435 | 0.95[ASN][1000 genomes] |
| rs4433442 | 0.83[JPT][hapmap] |
| rs4494179 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs5014478 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58186426 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6657176 | 0.95[ASN][1000 genomes] |
| rs74072547 | 0.90[AMR][1000 genomes] |
| rs74074547 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs74074557 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829926 | chr1:56188492-56360745 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:56295200-56320400 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 2 | chr1:56310400-56321200 | Weak transcription | Psoas Muscle | Psoas |
