Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10493181	0.81[AMR][1000 genomes]
rs12562891	0.81[AMR][1000 genomes]
rs12563373	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12565060	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12565147	0.86[GIH][hapmap];1.00[MEX][hapmap]
rs12569071	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17112890	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17112921	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17113044	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17113092	0.84[AMR][1000 genomes]
rs3795354	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4313435	0.88[ASN][1000 genomes]
rs4433442	0.83[JPT][hapmap]
rs4494179	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4526652	0.86[GIH][hapmap];1.00[MEX][hapmap]
rs5014478	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58186426	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58590950	0.98[AFR][1000 genomes]
rs6657176	0.88[ASN][1000 genomes]
rs6699599	0.86[GIH][hapmap];1.00[MEX][hapmap]
rs74074547	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74074557	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56292400-56299400	Weak transcription	Fetal Kidney	kidney
2	chr1:56293800-56298600	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:56293800-56298600	Weak transcription	Ovary	ovary
4	chr1:56293800-56298800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:56293800-56298800	Weak transcription	Osteobl	bone
6	chr1:56293800-56299000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:56293800-56299000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:56294000-56299000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:56294200-56298800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:56294400-56298600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:56295200-56320400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:56297400-56301400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr1:56297800-56299000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:56298000-56300800	Enhancers	Fetal Lung	lung
15	chr1:56298000-56302000	Enhancers	Fetal Stomach	stomach
16	chr1:56298400-56300000	Enhancers	Fetal Brain Male	brain

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