Variant report

Variant	rs17113044
Chromosome Location	chr1:56343861-56343862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10493181	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12562463	1.00[AFR][1000 genomes]
rs12562891	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs12563373	0.96[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12564526	1.00[AFR][1000 genomes]
rs12565060	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12566055	1.00[AFR][1000 genomes]
rs12566744	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12568831	1.00[AFR][1000 genomes]
rs12569071	0.96[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17112848	1.00[AFR][1000 genomes]
rs17112890	0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17112921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17113092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34731939	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3795354	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs41365145	1.00[AFR][1000 genomes]
rs4313435	0.97[ASN][1000 genomes]
rs4433442	0.83[JPT][hapmap]
rs4494179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5014478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58186426	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6657176	0.97[ASN][1000 genomes]
rs72671446	1.00[AFR][1000 genomes]
rs72671451	1.00[AFR][1000 genomes]
rs72671452	1.00[AFR][1000 genomes]
rs72671453	1.00[AFR][1000 genomes]
rs72671461	1.00[AFR][1000 genomes]
rs72671462	1.00[AFR][1000 genomes]
rs74072547	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs74074547	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74074557	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56341600-56344200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56342200-56345200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56342600-56344200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr1:56342600-56344400	Weak transcription	Ovary	ovary
5	chr1:56342600-56344800	Enhancers	Fetal Intestine Small	intestine
6	chr1:56343000-56344600	Enhancers	Fetal Intestine Large	intestine
7	chr1:56343200-56344200	Enhancers	Fetal Lung	lung
8	chr1:56343600-56344800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr1:56343800-56344000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:56343800-56350400	Weak transcription	NHDF-Ad	bronchial

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