Variant report

Variant	rs12568831
Chromosome Location	chr1:56251437-56251438
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10493181	1.00[AFR][1000 genomes]
rs12562463	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12562891	1.00[AFR][1000 genomes]
rs12564526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12566055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17112848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17112921	1.00[AFR][1000 genomes]
rs17113044	1.00[AFR][1000 genomes]
rs17113092	1.00[AFR][1000 genomes]
rs34731939	1.00[AFR][1000 genomes]
rs41365145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4494179	1.00[AFR][1000 genomes]
rs5014478	1.00[AFR][1000 genomes]
rs72671446	1.00[AFR][1000 genomes]
rs72671451	1.00[AFR][1000 genomes]
rs72671452	1.00[AFR][1000 genomes]
rs72671453	1.00[AFR][1000 genomes]
rs72671461	1.00[AFR][1000 genomes]
rs72671462	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56248000-56259400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:56249000-56255200	Enhancers	Placenta	Placenta
3	chr1:56250800-56251800	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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