Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10493181	1.00[AFR][1000 genomes]
rs12562463	1.00[AFR][1000 genomes]
rs12562891	1.00[AFR][1000 genomes]
rs12564526	1.00[AFR][1000 genomes]
rs12566055	1.00[AFR][1000 genomes]
rs12568831	1.00[AFR][1000 genomes]
rs17112848	1.00[AFR][1000 genomes]
rs17112921	1.00[AFR][1000 genomes]
rs17113044	1.00[AFR][1000 genomes]
rs17113092	1.00[AFR][1000 genomes]
rs34731939	1.00[AFR][1000 genomes]
rs41365145	1.00[AFR][1000 genomes]
rs4494179	1.00[AFR][1000 genomes]
rs5014478	1.00[AFR][1000 genomes]
rs72671437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72671446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72671462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72671467	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	nsv546304	chr1:56195659-56240015	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv947183	chr1:56217174-56235507	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56214400-56219600	Weak transcription	NHDF-Ad	bronchial
2	chr1:56216800-56219000	Weak transcription	Hela-S3	cervix

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