Variant report

Variant	rs11801875
Chromosome Location	chr1:56294738-56294739
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11799716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11801296	1.00[AMR][1000 genomes]
rs11803064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11804311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11805792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11808434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11809461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12563373	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	nsv1002958	chr1:56278696-56295112	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56292000-56296400	Weak transcription	Fetal Lung	lung
2	chr1:56292400-56299400	Weak transcription	Fetal Kidney	kidney
3	chr1:56293400-56294800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:56293800-56298600	Weak transcription	Colon Smooth Muscle	Colon
5	chr1:56293800-56298600	Weak transcription	Ovary	ovary
6	chr1:56293800-56298800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:56293800-56298800	Weak transcription	Osteobl	bone
8	chr1:56293800-56299000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:56293800-56299000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:56294000-56298000	Weak transcription	Fetal Stomach	stomach
11	chr1:56294000-56299000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:56294200-56296000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr1:56294200-56298800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:56294400-56298600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:56294600-56295000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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