Variant report

Variant	rs17112799
Chromosome Location	chr1:56267961-56267962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12033494	1.00[EUR][1000 genomes]
rs17112489	1.00[TSI][hapmap]
rs17112508	1.00[TSI][hapmap]
rs17112514	1.00[TSI][hapmap]
rs17112562	1.00[TSI][hapmap]
rs17112594	1.00[TSI][hapmap]
rs17112808	1.00[AMR][1000 genomes]
rs55756946	1.00[EUR][1000 genomes]
rs55887759	1.00[EUR][1000 genomes]
rs56148162	1.00[EUR][1000 genomes]
rs56400437	1.00[AMR][1000 genomes]
rs57645876	1.00[AMR][1000 genomes]
rs58590950	1.00[EUR][1000 genomes]
rs59376992	1.00[EUR][1000 genomes]
rs59529055	1.00[EUR][1000 genomes]
rs59552930	1.00[EUR][1000 genomes]
rs60518072	1.00[EUR][1000 genomes]
rs74072513	1.00[EUR][1000 genomes]
rs74072787	1.00[AMR][1000 genomes]
rs74074504	1.00[AMR][1000 genomes]
rs74074505	1.00[AMR][1000 genomes]
rs74074506	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074558	1.00[EUR][1000 genomes]
rs74074571	1.00[EUR][1000 genomes]
rs74074575	1.00[EUR][1000 genomes]
rs74074577	1.00[EUR][1000 genomes]
rs74074579	1.00[EUR][1000 genomes]
rs74074580	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56266600-56268600	Enhancers	Fetal Intestine Small	intestine
2	chr1:56266800-56268400	Enhancers	Fetal Intestine Large	intestine
3	chr1:56267200-56268600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr1:56267200-56269000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:56267200-56269000	Weak transcription	Psoas Muscle	Psoas
6	chr1:56267400-56268200	Enhancers	Fetal Lung	lung
7	chr1:56267800-56268200	Enhancers	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links