Variant report

Variant	rs74072787
Chromosome Location	chr1:56248019-56248020
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17112799	1.00[AMR][1000 genomes]
rs17112808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56400437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57645876	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074506	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56246800-56248400	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr1:56246800-56248600	Enhancers	Colon Smooth Muscle	Colon
3	chr1:56246800-56248800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56246800-56248800	Enhancers	Hela-S3	cervix
5	chr1:56247000-56248200	Enhancers	Fetal Intestine Large	intestine
6	chr1:56247200-56248400	Enhancers	NHDF-Ad	bronchial
7	chr1:56247200-56248600	Enhancers	Rectal Smooth Muscle	rectum
8	chr1:56247400-56248200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:56247400-56248200	Enhancers	HSMM	muscle
10	chr1:56247400-56248400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:56247400-56248400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:56247400-56248400	Enhancers	HSMMtube	muscle
13	chr1:56247400-56248800	Enhancers	NHLF	lung
14	chr1:56247600-56248400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr1:56247600-56248600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:56247600-56249600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:56247800-56248200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr1:56247800-56248400	Enhancers	Stomach Smooth Muscle	stomach
19	chr1:56248000-56259400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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