Variant report

Variant	rs57645876
Chromosome Location	chr1:56246760-56246761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17112799	1.00[AMR][1000 genomes]
rs17112808	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56400437	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072787	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074504	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074505	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074506	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56242600-56247400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:56243200-56247400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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