Variant report
| Variant | rs74074753 |
|---|---|
| Chromosome Location | chr1:57969592-57969593 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs12129740 | 0.82[AFR][1000 genomes] |
| rs17115785 | 0.82[AFR][1000 genomes] |
| rs17115788 | 0.82[AFR][1000 genomes] |
| rs17115791 | 0.82[AFR][1000 genomes] |
| rs17115796 | 0.82[AFR][1000 genomes] |
| rs17115804 | 0.82[AFR][1000 genomes] |
| rs17115825 | 0.82[AFR][1000 genomes] |
| rs17115830 | 0.82[AFR][1000 genomes] |
| rs17115832 | 0.82[AFR][1000 genomes] |
| rs17115833 | 0.82[AFR][1000 genomes] |
| rs17115846 | 0.82[AFR][1000 genomes] |
| rs55813143 | 0.88[AFR][1000 genomes] |
| rs56252125 | 0.82[AFR][1000 genomes] |
| rs57286771 | 0.82[AFR][1000 genomes] |
| rs59914221 | 0.82[AFR][1000 genomes] |
| rs74074723 | 0.82[AFR][1000 genomes] |
| rs74074724 | 0.82[AFR][1000 genomes] |
| rs74074727 | 0.88[AFR][1000 genomes] |
| rs74074728 | 0.82[AFR][1000 genomes] |
| rs74074729 | 0.82[AFR][1000 genomes] |
| rs74074730 | 0.82[AFR][1000 genomes] |
| rs74074732 | 0.82[AFR][1000 genomes] |
| rs74074734 | 0.82[AFR][1000 genomes] |
| rs74074736 | 0.82[AFR][1000 genomes] |
| rs74074749 | 0.82[AFR][1000 genomes] |
| rs74074750 | 0.82[AFR][1000 genomes] |
| rs74074751 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817216 | chr1:57801783-58130775 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001771 | chr1:57837089-58068175 | Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv870908 | chr1:57884310-58037783 | Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1012555 | chr1:57950355-58103389 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv870802 | chr1:57965114-58037031 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:57955200-57972800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr1:57968600-57969600 | Enhancers | Stomach Mucosa | stomach |
