Variant report

Variant	rs74074727
Chromosome Location	chr1:57925316-57925317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12117497	0.82[AFR][1000 genomes]
rs12129740	0.94[AFR][1000 genomes]
rs12132290	0.82[AFR][1000 genomes]
rs12140020	0.89[AFR][1000 genomes]
rs17115785	0.94[AFR][1000 genomes]
rs17115788	0.94[AFR][1000 genomes]
rs17115791	0.94[AFR][1000 genomes]
rs17115796	0.94[AFR][1000 genomes]
rs17115804	0.94[AFR][1000 genomes]
rs17115825	0.94[AFR][1000 genomes]
rs17115830	0.94[AFR][1000 genomes]
rs17115832	0.94[AFR][1000 genomes]
rs17115833	0.94[AFR][1000 genomes]
rs17115846	0.94[AFR][1000 genomes]
rs35843773	0.82[AFR][1000 genomes]
rs55813143	1.00[AFR][1000 genomes]
rs56252125	0.94[AFR][1000 genomes]
rs57286771	0.94[AFR][1000 genomes]
rs59914221	0.94[AFR][1000 genomes]
rs74074723	0.94[AFR][1000 genomes]
rs74074724	0.94[AFR][1000 genomes]
rs74074728	0.94[AFR][1000 genomes]
rs74074729	0.94[AFR][1000 genomes]
rs74074730	0.94[AFR][1000 genomes]
rs74074732	0.94[AFR][1000 genomes]
rs74074734	0.94[AFR][1000 genomes]
rs74074736	0.94[AFR][1000 genomes]
rs74074749	0.94[AFR][1000 genomes]
rs74074750	0.94[AFR][1000 genomes]
rs74074753	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57917400-57933800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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