Variant report

Variant	rs12117497
Chromosome Location	chr1:57895210-57895211
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11207031	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12116685	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12129740	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12132290	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140020	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12735312	0.94[AFR][1000 genomes]
rs12735915	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12737593	1.00[CEU][hapmap]
rs12742237	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs12744271	1.00[CEU][hapmap]
rs12758741	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17115785	0.88[AFR][1000 genomes]
rs17115788	0.88[AFR][1000 genomes]
rs17115791	0.88[AFR][1000 genomes]
rs17115796	0.88[AFR][1000 genomes]
rs17115804	0.88[AFR][1000 genomes]
rs17115825	0.88[AFR][1000 genomes]
rs17115830	0.88[AFR][1000 genomes]
rs17115832	0.88[AFR][1000 genomes]
rs17115833	0.88[AFR][1000 genomes]
rs17115846	0.88[AFR][1000 genomes]
rs34492687	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35404211	1.00[CEU][hapmap]
rs35843773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55813143	0.82[AFR][1000 genomes]
rs56252125	0.88[AFR][1000 genomes]
rs57286771	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs59909349	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59914221	0.88[AFR][1000 genomes]
rs71511461	0.94[AFR][1000 genomes]
rs74074723	0.88[AFR][1000 genomes]
rs74074724	0.88[AFR][1000 genomes]
rs74074727	0.82[AFR][1000 genomes]
rs74074728	0.88[AFR][1000 genomes]
rs74074729	0.88[AFR][1000 genomes]
rs74074730	0.88[AFR][1000 genomes]
rs74074732	0.88[AFR][1000 genomes]
rs74074734	0.88[AFR][1000 genomes]
rs74074736	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57894800-57904600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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