Variant report

Variant	rs12735312
Chromosome Location	chr1:57884027-57884028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12116685	0.84[AFR][1000 genomes]
rs12117497	0.94[AFR][1000 genomes]
rs12129740	0.83[AFR][1000 genomes]
rs12132290	0.94[AFR][1000 genomes]
rs12404869	0.84[AFR][1000 genomes]
rs12411278	0.84[AFR][1000 genomes]
rs12735915	0.89[AFR][1000 genomes]
rs12737593	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12741031	0.84[AFR][1000 genomes]
rs17115785	0.83[AFR][1000 genomes]
rs17115788	0.83[AFR][1000 genomes]
rs17115791	0.83[AFR][1000 genomes]
rs17115796	0.83[AFR][1000 genomes]
rs17115804	0.83[AFR][1000 genomes]
rs17115825	0.83[AFR][1000 genomes]
rs17115830	0.83[AFR][1000 genomes]
rs17115832	0.83[AFR][1000 genomes]
rs17115833	0.83[AFR][1000 genomes]
rs17115846	0.83[AFR][1000 genomes]
rs17457585	0.84[AFR][1000 genomes]
rs34339837	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34349049	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34374446	0.84[AFR][1000 genomes]
rs34492687	1.00[AFR][1000 genomes]
rs34591213	0.84[AFR][1000 genomes]
rs34707135	0.84[AFR][1000 genomes]
rs34725826	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35344722	0.84[AFR][1000 genomes]
rs35404211	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35511416	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35843773	0.94[AFR][1000 genomes]
rs3908772	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56096668	0.84[AFR][1000 genomes]
rs56156700	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56252125	0.83[AFR][1000 genomes]
rs57286771	0.83[AFR][1000 genomes]
rs59914221	0.83[AFR][1000 genomes]
rs71511461	1.00[AFR][1000 genomes]
rs71642115	0.84[AFR][1000 genomes]
rs71642118	0.84[AFR][1000 genomes]
rs74074723	0.83[AFR][1000 genomes]
rs74074724	0.83[AFR][1000 genomes]
rs74074728	0.83[AFR][1000 genomes]
rs74074729	0.83[AFR][1000 genomes]
rs74074730	0.83[AFR][1000 genomes]
rs74074732	0.83[AFR][1000 genomes]
rs74074734	0.83[AFR][1000 genomes]
rs74074736	0.83[AFR][1000 genomes]
rs74074976	0.84[AFR][1000 genomes]
rs74074978	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57871000-57887600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:57880000-57884800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:57881800-57885000	Weak transcription	Fetal Brain Female	brain
4	chr1:57883400-57884400	Enhancers	Fetal Brain Male	brain
5	chr1:57883800-57884200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:57883800-57885600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:57883800-57886800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:57884000-57884200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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