Variant report
Variant | rs12116685 |
---|---|
Chromosome Location | chr1:57894875-57894876 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10493227 | 1.00[MEX][hapmap] |
rs11207031 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs12117497 | 1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12129740 | 0.92[AMR][1000 genomes] |
rs12132290 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12140020 | 0.92[AMR][1000 genomes] |
rs12734724 | 1.00[CEU][hapmap] |
rs12735312 | 0.84[AFR][1000 genomes] |
rs12735915 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs12737593 | 1.00[CEU][hapmap] |
rs12742237 | 1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes] |
rs12743986 | 1.00[ASW][hapmap] |
rs12758741 | 1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs1341315 | 1.00[JPT][hapmap] |
rs1557223 | 1.00[ASW][hapmap] |
rs17115788 | 1.00[ASW][hapmap];0.87[LWK][hapmap] |
rs17115796 | 1.00[ASW][hapmap];0.87[LWK][hapmap] |
rs17457585 | 1.00[ASW][hapmap] |
rs34492687 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs35404211 | 1.00[CEU][hapmap] |
rs35843773 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs57286771 | 0.92[AMR][1000 genomes] |
rs59909349 | 0.85[AMR][1000 genomes] |
rs71511461 | 0.84[AFR][1000 genomes] |
rs7552354 | 1.00[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv817216 | chr1:57801783-58130775 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
2 | nsv1001771 | chr1:57837089-58068175 | Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv870908 | chr1:57884310-58037783 | Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:57894800-57895000 | Enhancers | H9 Cell Line | embryonic stem cell |
2 | chr1:57894800-57904600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |