Variant report

Variant	rs12742237
Chromosome Location	chr1:57908791-57908792
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10493227	1.00[MEX][hapmap]
rs11207031	1.00[JPT][hapmap]
rs12116685	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs12117497	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs12129740	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12132290	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12140020	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12735915	1.00[ASN][1000 genomes]
rs12743986	1.00[ASW][hapmap]
rs12758741	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341315	1.00[JPT][hapmap]
rs1557223	1.00[ASW][hapmap]
rs17115785	1.00[CEU][hapmap];0.80[AFR][1000 genomes]
rs17115788	1.00[ASW][hapmap];0.80[AFR][1000 genomes]
rs17115791	0.80[AFR][1000 genomes]
rs17115796	1.00[ASW][hapmap];0.80[AFR][1000 genomes]
rs17115804	0.80[AFR][1000 genomes]
rs17115825	0.80[AFR][1000 genomes]
rs17115830	0.80[AFR][1000 genomes]
rs17115832	0.80[AFR][1000 genomes]
rs17115833	0.80[AFR][1000 genomes]
rs17115846	0.80[AFR][1000 genomes]
rs17457585	1.00[ASW][hapmap]
rs35843773	1.00[ASN][1000 genomes]
rs56252125	0.80[AFR][1000 genomes]
rs57286771	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59909349	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59914221	0.80[AFR][1000 genomes]
rs74074723	0.80[AFR][1000 genomes]
rs74074724	0.80[AFR][1000 genomes]
rs74074728	0.80[AFR][1000 genomes]
rs74074729	0.80[AFR][1000 genomes]
rs74074730	0.80[AFR][1000 genomes]
rs74074732	0.80[AFR][1000 genomes]
rs74074734	0.80[AFR][1000 genomes]
rs74074736	0.80[AFR][1000 genomes]
rs7552354	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57906400-57913000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:57907000-57916400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links