Variant report

Variant	rs74079819
Chromosome Location	chr1:59310898-59310899
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4647013	0.86[AFR][1000 genomes]
rs4647019	0.86[AFR][1000 genomes]
rs58128095	0.81[AFR][1000 genomes]
rs58339644	0.86[AFR][1000 genomes]
rs74078639	0.86[AFR][1000 genomes]
rs74079808	0.81[AFR][1000 genomes]
rs74079815	0.88[AFR][1000 genomes]
rs74079818	1.00[AFR][1000 genomes]
rs74079820	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005354	chr1:59283572-59535812	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1014087	chr1:59286306-59334393	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59294000-59311000	Weak transcription	Gastric	stomach
2	chr1:59300600-59314800	Weak transcription	Aorta	Aorta
3	chr1:59306600-59314000	Weak transcription	Osteobl	bone
4	chr1:59306800-59313200	Weak transcription	NHEK	skin
5	chr1:59306800-59314000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:59307000-59312800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:59307200-59311600	Weak transcription	Lung	lung
8	chr1:59307400-59313200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:59308000-59312800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:59308000-59313400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:59308200-59312800	Weak transcription	NHDF-Ad	bronchial
12	chr1:59308200-59314200	Weak transcription	Small Intestine	intestine
13	chr1:59309800-59314200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:59310400-59313000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:59310400-59313000	Weak transcription	HMEC	breast
16	chr1:59310400-59314200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:59310600-59312800	Weak transcription	A549	lung
18	chr1:59310600-59313400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links