Variant report

Variant	rs58128095
Chromosome Location	chr1:59298778-59298779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12116591	0.94[AFR][1000 genomes]
rs4647013	0.81[AFR][1000 genomes]
rs4647019	0.81[AFR][1000 genomes]
rs57251170	0.94[AFR][1000 genomes]
rs57263270	0.88[AFR][1000 genomes]
rs58339644	0.81[AFR][1000 genomes]
rs60346486	0.94[AFR][1000 genomes]
rs74077827	0.94[AFR][1000 genomes]
rs74077829	0.94[AFR][1000 genomes]
rs74077830	0.94[AFR][1000 genomes]
rs74077832	0.94[AFR][1000 genomes]
rs74077834	0.94[AFR][1000 genomes]
rs74077835	0.94[AFR][1000 genomes]
rs74077837	0.94[AFR][1000 genomes]
rs74077838	0.94[AFR][1000 genomes]
rs74077839	0.94[AFR][1000 genomes]
rs74077840	0.94[AFR][1000 genomes]
rs74077844	0.94[AFR][1000 genomes]
rs74077847	0.94[AFR][1000 genomes]
rs74077850	0.94[AFR][1000 genomes]
rs74077851	0.89[AFR][1000 genomes]
rs74077854	0.94[AFR][1000 genomes]
rs74077855	0.94[AFR][1000 genomes]
rs74077856	0.94[AFR][1000 genomes]
rs74077866	0.94[AFR][1000 genomes]
rs74077868	0.94[AFR][1000 genomes]
rs74077870	0.94[AFR][1000 genomes]
rs74077873	0.94[AFR][1000 genomes]
rs74078326	0.94[AFR][1000 genomes]
rs74078327	0.94[AFR][1000 genomes]
rs74078639	0.81[AFR][1000 genomes]
rs74079803	0.94[AFR][1000 genomes]
rs74079808	1.00[AFR][1000 genomes]
rs74079815	0.94[AFR][1000 genomes]
rs74079818	0.81[AFR][1000 genomes]
rs74079819	0.81[AFR][1000 genomes]
rs74079820	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005354	chr1:59283572-59535812	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1014087	chr1:59286306-59334393	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59294000-59300400	Weak transcription	Aorta	Aorta
2	chr1:59294000-59301400	Weak transcription	Left Ventricle	heart
3	chr1:59294000-59311000	Weak transcription	Gastric	stomach
4	chr1:59294400-59305600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:59296400-59302000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:59296600-59304800	Weak transcription	NHLF	lung
7	chr1:59296800-59302000	Weak transcription	NHDF-Ad	bronchial
8	chr1:59296800-59303800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:59296800-59305600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:59298200-59300200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr1:59298400-59298800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:59298400-59299000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:59298400-59299000	Enhancers	Placenta Amnion	Placenta Amnion
14	chr1:59298400-59300000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr1:59298400-59302600	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr1:59298600-59299200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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