The 2.0 version of rSNPBase

Variant report

Variant rs60346486
Chromosome Location chr1:59253991-59253992
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59251400-59256000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:59251400-59275000 Weak transcription Ovary ovary
3 chr1:59251400-59279200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr1:59251600-59256000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr1:59251600-59256800 Weak transcription Esophagus oesophagus
6 chr1:59251600-59260000 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr1:59251600-59261400 Weak transcription Psoas Muscle Psoas
8 chr1:59251800-59255000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:59251800-59255000 Weak transcription Hela-S3 cervix
10 chr1:59251800-59255200 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr1:59251800-59260000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
12 chr1:59251800-59261400 Weak transcription Left Ventricle heart
13 chr1:59251800-59264400 Weak transcription Brain Cingulate Gyrus brain
14 chr1:59251800-59265000 Weak transcription Stomach Mucosa stomach
15 chr1:59251800-59277200 Weak transcription Primary T cells fromperipheralblood blood
16 chr1:59251800-59278200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
17 chr1:59252000-59254000 Weak transcription Duodenum Smooth Muscle Duodenum
18 chr1:59252000-59254200 Weak transcription Primary T cells from cord blood blood
19 chr1:59252000-59254600 Weak transcription Stomach Smooth Muscle stomach
20 chr1:59252000-59256200 Weak transcription Primary T helper naive cells from peripheral blood blood
21 chr1:59252000-59257000 Weak transcription Primary T killer memory cells from peripheral blood blood
22 chr1:59252200-59258600 Weak transcription Right Ventricle heart
23 chr1:59252200-59264400 Weak transcription Brain Hippocampus Middle brain
24 chr1:59252400-59255000 Weak transcription HSMMtube muscle
25 chr1:59252600-59255000 Weak transcription Brain Inferior Temporal Lobe brain
26 chr1:59252600-59257600 Weak transcription HSMM muscle
27 chr1:59252600-59258600 Weak transcription Fetal Heart heart
28 chr1:59252600-59258600 Weak transcription Skeletal Muscle Female skeletal muscle
29 chr1:59252800-59255000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr1:59252800-59260800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr1:59252800-59268600 Weak transcription Pancreas Pancrea
32 chr1:59253000-59278000 Weak transcription Primary T helper cells PMA-I stimulated --
33 chr1:59253200-59254200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr1:59253200-59255000 Weak transcription Placenta Amnion Placenta Amnion
35 chr1:59253200-59256200 Weak transcription Primary T helper naive cells fromperipheralblood blood
36 chr1:59253400-59254400 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
37 chr1:59253800-59254000 ZNF genes & repeats Brain Substantia Nigra brain
38 chr1:59253800-59254600 ZNF genes & repeats Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr1:59253800-59254600 ZNF genes & repeats Primary B cells from peripheral blood blood
40 chr1:59253800-59255000 ZNF genes & repeats Primary B cells from cord blood blood

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Last update: Aug 31, 2015