Variant report

Variant	rs74077830
Chromosome Location	chr1:59257091-59257092
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:59255555..59257774-chr1:59277894..59280360,3	MCF-7	breast:
2	chr1:59255857..59257513-chr1:59257691..59259528,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272226	Chromatin interaction

rs_ID	r²[population]
rs12116591	1.00[AFR][1000 genomes]
rs4647011	0.82[AFR][1000 genomes]
rs57251170	1.00[AFR][1000 genomes]
rs57263270	0.94[AFR][1000 genomes]
rs58128095	0.94[AFR][1000 genomes]
rs60346486	1.00[AFR][1000 genomes]
rs74077827	1.00[AFR][1000 genomes]
rs74077829	1.00[AFR][1000 genomes]
rs74077832	1.00[AFR][1000 genomes]
rs74077834	1.00[AFR][1000 genomes]
rs74077835	1.00[AFR][1000 genomes]
rs74077837	1.00[AFR][1000 genomes]
rs74077838	1.00[AFR][1000 genomes]
rs74077839	1.00[AFR][1000 genomes]
rs74077840	1.00[AFR][1000 genomes]
rs74077844	1.00[AFR][1000 genomes]
rs74077847	1.00[AFR][1000 genomes]
rs74077850	1.00[AFR][1000 genomes]
rs74077851	0.94[AFR][1000 genomes]
rs74077854	1.00[AFR][1000 genomes]
rs74077855	1.00[AFR][1000 genomes]
rs74077856	1.00[AFR][1000 genomes]
rs74077866	1.00[AFR][1000 genomes]
rs74077868	1.00[AFR][1000 genomes]
rs74077870	1.00[AFR][1000 genomes]
rs74077873	1.00[AFR][1000 genomes]
rs74078326	1.00[AFR][1000 genomes]
rs74078327	1.00[AFR][1000 genomes]
rs74079803	1.00[AFR][1000 genomes]
rs74079808	0.94[AFR][1000 genomes]
rs74079815	0.88[AFR][1000 genomes]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59251400-59275000	Weak transcription	Ovary	ovary
2	chr1:59251400-59279200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:59251600-59260000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:59251600-59261400	Weak transcription	Psoas Muscle	Psoas
5	chr1:59251800-59260000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr1:59251800-59261400	Weak transcription	Left Ventricle	heart
7	chr1:59251800-59264400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:59251800-59265000	Weak transcription	Stomach Mucosa	stomach
9	chr1:59251800-59277200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr1:59251800-59278200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:59252200-59258600	Weak transcription	Right Ventricle	heart
12	chr1:59252200-59264400	Weak transcription	Brain Hippocampus Middle	brain
13	chr1:59252600-59257600	Weak transcription	HSMM	muscle
14	chr1:59252600-59258600	Weak transcription	Fetal Heart	heart
15	chr1:59252600-59258600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr1:59252800-59260800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:59252800-59268600	Weak transcription	Pancreas	Pancrea
18	chr1:59253000-59278000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr1:59254000-59281000	Weak transcription	Brain Substantia Nigra	brain
20	chr1:59254400-59260600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:59254400-59271600	Weak transcription	Primary T cells from cord blood	blood
22	chr1:59254600-59260400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr1:59254800-59260000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:59255000-59257200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr1:59255800-59262000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr1:59256600-59259800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr1:59256600-59260000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr1:59256800-59259400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr1:59256800-59260000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr1:59256800-59260000	Weak transcription	NHEK	skin
31	chr1:59257000-59257200	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr1:59257000-59271400	Weak transcription	Esophagus	oesophagus

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