Variant report

Variant	rs74079803
Chromosome Location	chr1:59292070-59292071
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12116591	1.00[AFR][1000 genomes]
rs4647011	0.82[AFR][1000 genomes]
rs57251170	1.00[AFR][1000 genomes]
rs57263270	0.94[AFR][1000 genomes]
rs58128095	0.94[AFR][1000 genomes]
rs60346486	1.00[AFR][1000 genomes]
rs74077827	1.00[AFR][1000 genomes]
rs74077829	1.00[AFR][1000 genomes]
rs74077830	1.00[AFR][1000 genomes]
rs74077832	1.00[AFR][1000 genomes]
rs74077834	1.00[AFR][1000 genomes]
rs74077835	1.00[AFR][1000 genomes]
rs74077837	1.00[AFR][1000 genomes]
rs74077838	1.00[AFR][1000 genomes]
rs74077839	1.00[AFR][1000 genomes]
rs74077840	1.00[AFR][1000 genomes]
rs74077844	1.00[AFR][1000 genomes]
rs74077847	1.00[AFR][1000 genomes]
rs74077850	1.00[AFR][1000 genomes]
rs74077851	0.94[AFR][1000 genomes]
rs74077854	1.00[AFR][1000 genomes]
rs74077855	1.00[AFR][1000 genomes]
rs74077856	1.00[AFR][1000 genomes]
rs74077866	1.00[AFR][1000 genomes]
rs74077868	1.00[AFR][1000 genomes]
rs74077870	1.00[AFR][1000 genomes]
rs74077873	1.00[AFR][1000 genomes]
rs74078326	1.00[AFR][1000 genomes]
rs74078327	1.00[AFR][1000 genomes]
rs74079808	0.94[AFR][1000 genomes]
rs74079815	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005354	chr1:59283572-59535812	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1014087	chr1:59286306-59334393	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59282400-59293800	Weak transcription	Aorta	Aorta
2	chr1:59283200-59293600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:59288800-59292400	Enhancers	NHEK	skin
4	chr1:59289000-59292200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:59289800-59292400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:59290400-59292600	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:59290400-59293800	Weak transcription	Gastric	stomach
8	chr1:59291000-59292400	Weak transcription	Psoas Muscle	Psoas
9	chr1:59291000-59292400	Weak transcription	Osteobl	bone
10	chr1:59291000-59293800	Weak transcription	Left Ventricle	heart
11	chr1:59291000-59295800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:59291000-59296200	Weak transcription	Ovary	ovary
13	chr1:59291000-59298400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr1:59291600-59293200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:59291800-59292200	ZNF genes & repeats	Primary T cells from cord blood	blood
16	chr1:59292000-59292800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:59292000-59294400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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