Variant report

Variant	rs74086519
Chromosome Location	chr13:53507628-53507629
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17052613	1.00[AMR][1000 genomes]
rs56217013	1.00[AMR][1000 genomes]
rs56740905	1.00[AMR][1000 genomes]
rs57598135	1.00[AMR][1000 genomes]
rs58545123	1.00[AMR][1000 genomes]
rs58732737	1.00[AMR][1000 genomes]
rs60472137	1.00[AMR][1000 genomes]
rs61141148	1.00[AMR][1000 genomes]
rs74086052	1.00[AMR][1000 genomes]
rs74086055	1.00[AMR][1000 genomes]
rs74086507	1.00[AMR][1000 genomes]
rs74086510	1.00[AMR][1000 genomes]
rs74086511	1.00[AMR][1000 genomes]
rs74086514	1.00[AMR][1000 genomes]
rs74086515	1.00[AMR][1000 genomes]
rs74086517	1.00[AMR][1000 genomes]
rs74086523	1.00[AMR][1000 genomes]
rs74086527	1.00[AMR][1000 genomes]
rs74088311	1.00[AMR][1000 genomes]
rs74088318	1.00[AMR][1000 genomes]
rs74088320	1.00[AMR][1000 genomes]
rs74088322	1.00[AMR][1000 genomes]
rs74088323	1.00[AMR][1000 genomes]
rs74088324	1.00[AMR][1000 genomes]
rs74088325	1.00[AMR][1000 genomes]
rs74088330	1.00[AMR][1000 genomes]
rs74088337	1.00[AMR][1000 genomes]
rs74088339	1.00[AMR][1000 genomes]
rs74088358	1.00[AMR][1000 genomes]
rs74088371	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53498400-53508600	Enhancers	Fetal Muscle Leg	muscle
2	chr13:53503400-53509200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:53504600-53508600	Enhancers	Fetal Brain Male	brain
4	chr13:53504800-53508200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr13:53505400-53510000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr13:53505600-53509400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr13:53505600-53511200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:53506200-53508600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr13:53507000-53507800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr13:53507000-53508200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr13:53507200-53510000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr13:53507400-53508000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr13:53507600-53507800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr13:53507600-53508200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links