Variant report

Variant	rs74086527
Chromosome Location	chr13:53509878-53509879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17052613	1.00[AMR][1000 genomes]
rs56217013	1.00[AMR][1000 genomes]
rs56740905	1.00[AMR][1000 genomes]
rs57598135	1.00[AMR][1000 genomes]
rs58545123	1.00[AMR][1000 genomes]
rs58732737	1.00[AMR][1000 genomes]
rs60472137	1.00[AMR][1000 genomes]
rs61141148	1.00[AMR][1000 genomes]
rs74086052	1.00[AMR][1000 genomes]
rs74086055	1.00[AMR][1000 genomes]
rs74086507	1.00[AMR][1000 genomes]
rs74086510	1.00[AMR][1000 genomes]
rs74086511	1.00[AMR][1000 genomes]
rs74086514	1.00[AMR][1000 genomes]
rs74086515	1.00[AMR][1000 genomes]
rs74086517	1.00[AMR][1000 genomes]
rs74086519	1.00[AMR][1000 genomes]
rs74086523	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74088311	1.00[AMR][1000 genomes]
rs74088318	1.00[AMR][1000 genomes]
rs74088320	1.00[AMR][1000 genomes]
rs74088322	1.00[AMR][1000 genomes]
rs74088323	1.00[AMR][1000 genomes]
rs74088324	1.00[AMR][1000 genomes]
rs74088325	1.00[AMR][1000 genomes]
rs74088330	1.00[AMR][1000 genomes]
rs74088337	1.00[AMR][1000 genomes]
rs74088339	1.00[AMR][1000 genomes]
rs74088358	1.00[AMR][1000 genomes]
rs74088371	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53505400-53510000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr13:53505600-53511200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:53507200-53510000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr13:53508200-53510400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:53508200-53510400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr13:53508200-53510800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:53508200-53511400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr13:53508600-53510000	Weak transcription	Fetal Muscle Leg	muscle
9	chr13:53509000-53510800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr13:53509400-53510800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr13:53509400-53511600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr13:53509600-53510200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr13:53509600-53510800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr13:53509600-53511600	Enhancers	Fetal Heart	heart
15	chr13:53509800-53510000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr13:53509800-53510600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr13:53509800-53511000	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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