Variant report

Variant	rs74087429
Chromosome Location	chr13:51836933-51836934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51796112..51796761-chr13:51836717..51837532,2	MCF-7	breast:
2	chr13:51836812..51837615-chr13:51860099..51861219,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150510	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56039960	1.00[AMR][1000 genomes]
rs74087442	1.00[AMR][1000 genomes]
rs74087443	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51821600-51839000	Weak transcription	Esophagus	oesophagus
2	chr13:51821600-51845000	Weak transcription	Fetal Brain Male	brain
3	chr13:51824200-51844000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:51825400-51840600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr13:51826400-51854600	Weak transcription	Aorta	Aorta
6	chr13:51832000-51837800	Genic enhancers	Brain Cingulate Gyrus	brain
7	chr13:51832600-51837600	Enhancers	Left Ventricle	heart
8	chr13:51832800-51843200	Weak transcription	Fetal Lung	lung
9	chr13:51833200-51837600	Enhancers	Right Ventricle	heart
10	chr13:51833400-51839400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr13:51833600-51838200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr13:51833600-51860400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr13:51834000-51837400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr13:51834000-51837800	Enhancers	Brain Substantia Nigra	brain
15	chr13:51834000-51845200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr13:51834000-51850800	Weak transcription	Pancreas	Pancrea
17	chr13:51834200-51839400	Weak transcription	Lung	lung
18	chr13:51834200-51856400	Weak transcription	Gastric	stomach
19	chr13:51834800-51837800	Enhancers	Fetal Heart	heart
20	chr13:51835200-51837400	Genic enhancers	H1 Cell Line	embryonic stem cell
21	chr13:51835200-51837400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr13:51835200-51837600	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr13:51835200-51837800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr13:51835400-51837200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr13:51835400-51837600	Enhancers	Brain Anterior Caudate	brain
26	chr13:51835600-51837200	Genic enhancers	HUES48 Cell Line	embryonic stem cell
27	chr13:51835600-51837800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr13:51835800-51837200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr13:51835800-51837200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr13:51835800-51837400	Genic enhancers	HUES6 Cell Line	embryonic stem cell
31	chr13:51835800-51837400	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr13:51835800-51837600	Genic enhancers	H9 Cell Line	embryonic stem cell
33	chr13:51835800-51837600	Genic enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr13:51835800-51837600	Enhancers	Brain Angular Gyrus	brain
35	chr13:51836000-51845600	Weak transcription	Fetal Brain Female	brain
36	chr13:51836200-51837000	Weak transcription	Spleen	Spleen
37	chr13:51836200-51837200	Genic enhancers	HUES64 Cell Line	embryonic stem cell
38	chr13:51836200-51837400	Enhancers	Fetal Muscle Leg	muscle
39	chr13:51836200-51837600	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr13:51836200-51837600	Enhancers	Stomach Smooth Muscle	stomach
41	chr13:51836200-51837800	Enhancers	Fetal Muscle Trunk	muscle
42	chr13:51836200-51839200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr13:51836200-51841800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr13:51836200-51843000	Weak transcription	Ovary	ovary
45	chr13:51836200-51850000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr13:51836400-51837200	Enhancers	Colon Smooth Muscle	Colon
47	chr13:51836400-51837400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr13:51836400-51840600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr13:51836600-51837000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr13:51836600-51837000	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links