Variant report

Variant	rs74087443
Chromosome Location	chr13:51852454-51852455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51851052..51852556-chr13:51855071..51857064,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56039960	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087429	1.00[AMR][1000 genomes]
rs74087436	0.87[AFR][1000 genomes]
rs74087442	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51826400-51854600	Weak transcription	Aorta	Aorta
2	chr13:51833600-51860400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr13:51834200-51856400	Weak transcription	Gastric	stomach
4	chr13:51837600-51852600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:51837800-51860400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:51839800-51854600	Weak transcription	Lung	lung
7	chr13:51840000-51852600	Weak transcription	Fetal Stomach	stomach
8	chr13:51841200-51858000	Weak transcription	Fetal Muscle Leg	muscle
9	chr13:51841600-51857600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr13:51844200-51853600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr13:51845600-51853400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr13:51846000-51853400	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr13:51846200-51852600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr13:51846400-51853600	Weak transcription	Brain Germinal Matrix	brain
15	chr13:51846400-51866400	Weak transcription	Fetal Brain Male	brain
16	chr13:51846600-51865600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr13:51846600-51865600	Weak transcription	Fetal Lung	lung
18	chr13:51848000-51854800	Enhancers	Fetal Heart	heart
19	chr13:51850000-51854800	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr13:51850200-51865600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr13:51850400-51854400	Weak transcription	Right Ventricle	heart
22	chr13:51850600-51853800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr13:51850600-51854400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr13:51850800-51853600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr13:51850800-51856600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr13:51851000-51856600	Weak transcription	Right Atrium	heart
27	chr13:51851000-51866400	Weak transcription	Adipose Nuclei	Adipose
28	chr13:51851200-51856200	Weak transcription	Liver	Liver
29	chr13:51851200-51856400	Weak transcription	Pancreas	Pancrea
30	chr13:51851200-51865600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr13:51851800-51853000	Enhancers	Brain Angular Gyrus	brain
32	chr13:51851800-51853200	Enhancers	Colon Smooth Muscle	Colon
33	chr13:51851800-51853800	Enhancers	Rectal Smooth Muscle	rectum
34	chr13:51852000-51852600	Enhancers	Stomach Smooth Muscle	stomach
35	chr13:51852000-51853000	Genic enhancers	Left Ventricle	heart
36	chr13:51852000-51853200	Genic enhancers	Brain Inferior Temporal Lobe	brain
37	chr13:51852000-51854400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
38	chr13:51852000-51854400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr13:51852200-51852800	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr13:51852200-51854400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr13:51852200-51854600	Enhancers	Brain Hippocampus Middle	brain
42	chr13:51852200-51855600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr13:51852200-51856600	Strong transcription	Fetal Brain Female	brain
44	chr13:51852400-51852600	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr13:51852400-51852600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr13:51852400-51852600	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr13:51852400-51852800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr13:51852400-51853000	Enhancers	Spleen	Spleen
49	chr13:51852400-51853200	Genic enhancers	H9 Cell Line	embryonic stem cell
50	chr13:51852400-51853400	Enhancers	Brain Cingulate Gyrus	brain

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