Variant report

Variant	rs74092621
Chromosome Location	chr13:70440546-70440547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10507773	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1364378	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1424311	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17085438	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1991076	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1991077	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1991078	0.87[ASN][1000 genomes]
rs2911521	1.00[ASN][1000 genomes]
rs2911522	1.00[ASN][1000 genomes]
rs2911523	1.00[ASN][1000 genomes]
rs3012108	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3012109	1.00[ASN][1000 genomes]
rs3012111	1.00[ASN][1000 genomes]
rs35457419	0.87[ASN][1000 genomes]
rs56286102	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59297195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59334541	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6562596	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335903	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73508421	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv900483	chr13:70254555-70464234	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv832643	chr13:70324440-70486661	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv900487	chr13:70327693-70548643	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1041207	chr13:70347748-70473605	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv530724	chr13:70393680-71164323	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1045918	chr13:70409675-70615997	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3382366	chr13:70440351-70444949	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70440000-70440600	Enhancers	Pancreatic Islets	Pancreatic Islet

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