Variant report

Variant	rs2911522
Chromosome Location	chr13:70427789-70427790
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10507773	1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11617171	1.00[CHB][hapmap]
rs11618596	1.00[CHB][hapmap]
rs12428011	1.00[CHB][hapmap]
rs1364376	1.00[CHB][hapmap]
rs1364378	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1364379	0.83[AFR][1000 genomes]
rs1424311	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17085319	1.00[CHB][hapmap]
rs17085322	1.00[CHB][hapmap]
rs17085438	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17085439	1.00[CHB][hapmap]
rs17085441	1.00[CHB][hapmap]
rs17085443	1.00[CHB][hapmap]
rs17085444	1.00[CHB][hapmap]
rs17085527	0.83[AFR][1000 genomes]
rs17085529	0.83[AFR][1000 genomes]
rs17085565	1.00[CHB][hapmap]
rs17085605	1.00[CHB][hapmap]
rs17085643	1.00[CHB][hapmap]
rs1991075	1.00[CHB][hapmap]
rs1991076	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1991077	1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1991078	0.87[ASN][1000 genomes]
rs2113361	1.00[CHB][hapmap]
rs2113362	1.00[CHB][hapmap]
rs2113363	1.00[CHB][hapmap]
rs2161757	1.00[CHB][hapmap]
rs2161758	1.00[CHB][hapmap]
rs2161759	1.00[CHB][hapmap]
rs2875574	1.00[CHB][hapmap]
rs2911504	1.00[CHB][hapmap]
rs2911506	1.00[CHB][hapmap]
rs2911507	1.00[CHB][hapmap]
rs2911508	1.00[CHB][hapmap]
rs2911509	1.00[CHB][hapmap]
rs2911514	1.00[CHB][hapmap]
rs2911515	1.00[CHB][hapmap]
rs2911516	1.00[CHB][hapmap]
rs2911517	1.00[CHB][hapmap]
rs2911519	1.00[CHB][hapmap]
rs2911521	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2911523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2911524	0.83[AFR][1000 genomes]
rs3012100	1.00[CHB][hapmap]
rs3012102	1.00[CHB][hapmap]
rs3012104	1.00[CHB][hapmap]
rs3012106	1.00[CHB][hapmap]
rs3012107	1.00[CHB][hapmap]
rs3012108	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3012109	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3012110	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs3012111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3021374	1.00[CHB][hapmap]
rs35457419	0.87[ASN][1000 genomes]
rs3812856	1.00[CHB][hapmap]
rs56286102	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59297195	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59334541	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61963756	0.83[AFR][1000 genomes]
rs6562596	1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7316942	1.00[CHB][hapmap]
rs7318606	1.00[CHB][hapmap]
rs7331664	1.00[CHB][hapmap]
rs7331958	1.00[CHB][hapmap]
rs7334775	1.00[CHB][hapmap]
rs7335552	1.00[CHB][hapmap]
rs7335903	1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73508421	0.86[ASN][1000 genomes]
rs74092621	1.00[ASN][1000 genomes]
rs9592653	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv900483	chr13:70254555-70464234	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv832643	chr13:70324440-70486661	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv900487	chr13:70327693-70548643	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1041207	chr13:70347748-70473605	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv530724	chr13:70393680-71164323	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1045918	chr13:70409675-70615997	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70426000-70430400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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