Variant report

Variant	rs2875574
Chromosome Location	chr13:70413346-70413347
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10507773	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12428011	1.00[CHB][hapmap]
rs1364376	1.00[CHB][hapmap]
rs1364378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1424311	1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17085319	1.00[CHB][hapmap]
rs17085322	1.00[CHB][hapmap]
rs17085438	1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17085439	1.00[CHB][hapmap]
rs17085441	1.00[CHB][hapmap];0.94[YRI][hapmap]
rs17085443	1.00[CHB][hapmap]
rs17085444	1.00[CHB][hapmap]
rs17085565	1.00[CHB][hapmap]
rs1991075	1.00[CHB][hapmap]
rs1991076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1991077	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1991078	0.87[ASN][1000 genomes]
rs2113360	1.00[CHB][hapmap]
rs2113361	1.00[CHB][hapmap]
rs2113362	1.00[CHB][hapmap]
rs2113363	1.00[CHB][hapmap]
rs2161757	1.00[CHB][hapmap]
rs2161758	1.00[CHB][hapmap]
rs2161759	1.00[CHB][hapmap]
rs2911504	1.00[CHB][hapmap];0.94[YRI][hapmap]
rs2911506	1.00[CHB][hapmap]
rs2911507	1.00[CHB][hapmap]
rs2911508	1.00[CHB][hapmap]
rs2911509	1.00[CHB][hapmap]
rs2911514	1.00[CHB][hapmap]
rs2911515	1.00[CHB][hapmap]
rs2911516	1.00[CHB][hapmap]
rs2911517	1.00[CHB][hapmap]
rs2911519	1.00[CHB][hapmap]
rs2911521	1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2911522	1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2911523	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3012100	1.00[CHB][hapmap]
rs3012102	1.00[CHB][hapmap]
rs3012104	1.00[CHB][hapmap]
rs3012106	1.00[CHB][hapmap]
rs3012107	1.00[CHB][hapmap]
rs3012108	1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3012109	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3012110	1.00[CHB][hapmap]
rs3012111	1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3021374	1.00[CHB][hapmap];0.83[YRI][hapmap]
rs35457419	0.87[ASN][1000 genomes]
rs3812856	1.00[CHB][hapmap]
rs56286102	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59297195	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59334541	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6562596	1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7316942	1.00[CHB][hapmap]
rs7318606	1.00[CHB][hapmap]
rs7331664	1.00[CHB][hapmap]
rs7331958	1.00[CHB][hapmap];0.94[YRI][hapmap]
rs7335378	1.00[YRI][hapmap]
rs7335552	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7335903	1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7339175	1.00[CHB][hapmap];0.94[YRI][hapmap]
rs73508421	0.86[ASN][1000 genomes]
rs74092621	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9592653	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv1837120	chr13:70209507-70425056	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv482460	chr13:70240630-70419347	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv900483	chr13:70254555-70464234	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv900486	chr13:70302991-70421896	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv832643	chr13:70324440-70486661	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv900487	chr13:70327693-70548643	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1041207	chr13:70347748-70473605	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv530724	chr13:70393680-71164323	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv976131	chr13:70402083-70423358	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv1045918	chr13:70409675-70615997	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links