Variant report

Variant	rs17085605
Chromosome Location	chr13:70469425-70469426
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10507773	0.86[ASN][1000 genomes]
rs11617171	1.00[CHB][hapmap]
rs11618596	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1364378	0.86[ASN][1000 genomes]
rs1424311	0.86[ASN][1000 genomes]
rs17085438	1.00[CHD][hapmap];1.00[MEX][hapmap];0.86[ASN][1000 genomes]
rs17085443	1.00[CHD][hapmap];0.86[MEX][hapmap]
rs17085444	1.00[CHD][hapmap];1.00[MEX][hapmap]
rs17085643	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs17085738	1.00[CEU][hapmap]
rs17085746	1.00[CEU][hapmap]
rs17085756	1.00[CEU][hapmap]
rs17085765	1.00[CEU][hapmap]
rs17085771	1.00[CEU][hapmap]
rs17085776	1.00[CEU][hapmap]
rs17085785	1.00[CEU][hapmap]
rs17085791	1.00[CEU][hapmap]
rs17085798	1.00[CEU][hapmap]
rs17085809	1.00[CEU][hapmap]
rs17085818	1.00[CEU][hapmap]
rs1888899	1.00[CEU][hapmap]
rs1991076	0.86[ASN][1000 genomes]
rs1991077	0.86[ASN][1000 genomes]
rs2113357	1.00[CHD][hapmap]
rs2150960	1.00[CEU][hapmap]
rs2210451	1.00[CEU][hapmap]
rs2911504	1.00[CHD][hapmap];1.00[MEX][hapmap]
rs2911506	1.00[CHD][hapmap];1.00[MEX][hapmap]
rs2911518	1.00[CHD][hapmap]
rs2911519	1.00[CHD][hapmap];1.00[MEX][hapmap]
rs2911521	0.86[ASN][1000 genomes]
rs2911522	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2911523	0.86[ASN][1000 genomes]
rs3012107	1.00[CHD][hapmap];1.00[MEX][hapmap]
rs3012108	1.00[CHD][hapmap];1.00[MEX][hapmap];0.86[ASN][1000 genomes]
rs3012109	0.86[ASN][1000 genomes]
rs3012111	0.86[ASN][1000 genomes]
rs3812856	1.00[CEU][hapmap]
rs56156636	1.00[EUR][1000 genomes]
rs56286102	0.86[ASN][1000 genomes]
rs59297195	0.86[ASN][1000 genomes]
rs59334541	0.86[ASN][1000 genomes]
rs59614129	1.00[EUR][1000 genomes]
rs6562596	0.86[ASN][1000 genomes]
rs7334775	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7335903	0.86[ASN][1000 genomes]
rs7337151	1.00[CEU][hapmap]
rs7337519	1.00[CHD][hapmap]
rs7337863	1.00[CEU][hapmap]
rs7338117	1.00[CEU][hapmap]
rs74090650	1.00[EUR][1000 genomes]
rs74090659	1.00[EUR][1000 genomes]
rs74092621	0.86[ASN][1000 genomes]
rs9529627	1.00[CHD][hapmap]
rs9788409	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv832643	chr13:70324440-70486661	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv900487	chr13:70327693-70548643	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1041207	chr13:70347748-70473605	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv530724	chr13:70393680-71164323	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1045918	chr13:70409675-70615997	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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