Variant report

Variant	rs17085798
Chromosome Location	chr13:70531829-70531830
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10507773	1.00[CEU][hapmap]
rs12428011	1.00[CEU][hapmap]
rs1364376	1.00[CEU][hapmap]
rs1424311	1.00[CEU][hapmap]
rs17085438	1.00[CEU][hapmap]
rs17085439	1.00[CEU][hapmap]
rs17085441	1.00[CEU][hapmap]
rs17085443	1.00[CEU][hapmap]
rs17085444	1.00[CEU][hapmap]
rs17085605	1.00[CEU][hapmap]
rs17085738	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17085746	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17085756	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17085765	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17085771	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17085776	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17085785	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17085791	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17085809	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17085818	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17085833	0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs1888899	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1888900	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1991073	1.00[CEU][hapmap]
rs1991074	1.00[CEU][hapmap]
rs1991075	1.00[CEU][hapmap]
rs1991077	1.00[CEU][hapmap]
rs2113360	1.00[CEU][hapmap]
rs2113361	1.00[CEU][hapmap]
rs2113362	1.00[CEU][hapmap]
rs2113363	1.00[CEU][hapmap]
rs2113364	1.00[CEU][hapmap]
rs2150960	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap]
rs2161757	1.00[CEU][hapmap]
rs2161758	1.00[CEU][hapmap]
rs2161759	1.00[CEU][hapmap]
rs2210447	0.86[CHB][hapmap]
rs2210448	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs2210449	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs2210451	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap]
rs2210454	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2482565	0.86[CHB][hapmap]
rs2875575	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2911504	1.00[CEU][hapmap]
rs2911506	1.00[CEU][hapmap]
rs2911507	1.00[CEU][hapmap]
rs2911508	1.00[CEU][hapmap]
rs2911514	1.00[CEU][hapmap]
rs2911515	1.00[CEU][hapmap]
rs2911516	1.00[CEU][hapmap]
rs2911517	1.00[CEU][hapmap]
rs2911519	1.00[CEU][hapmap]
rs3012100	1.00[CEU][hapmap]
rs3012102	1.00[CEU][hapmap]
rs3012104	1.00[CEU][hapmap]
rs3012105	1.00[CEU][hapmap]
rs3012106	1.00[CEU][hapmap]
rs3012107	1.00[CEU][hapmap]
rs3012108	1.00[CEU][hapmap]
rs3021374	1.00[CEU][hapmap]
rs3812856	1.00[CEU][hapmap]
rs57111056	0.87[ASN][1000 genomes]
rs57793771	0.90[ASN][1000 genomes]
rs59082732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60869989	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60954548	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61159451	0.86[ASN][1000 genomes]
rs7316942	1.00[CEU][hapmap]
rs7318606	1.00[CEU][hapmap]
rs7319197	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7325546	0.86[CHB][hapmap]
rs7325599	0.86[CHB][hapmap]
rs7331664	1.00[CEU][hapmap]
rs7331958	1.00[CEU][hapmap]
rs7335378	1.00[CEU][hapmap]
rs7335552	1.00[CEU][hapmap]
rs7335903	1.00[CEU][hapmap]
rs7337151	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7337863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs7338117	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7339175	1.00[CEU][hapmap]
rs73510191	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73510192	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73512608	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73512626	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7491419	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8000924	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs9788409	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900487	chr13:70327693-70548643	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv530724	chr13:70393680-71164323	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1045918	chr13:70409675-70615997	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1038695	chr13:70484098-70654204	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900488	chr13:70487282-70560731	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900489	chr13:70487282-70578306	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv455966	chr13:70491038-70551029	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv562219	chr13:70491038-70551029	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv900490	chr13:70491038-70551029	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv900491	chr13:70499394-70578306	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv900492	chr13:70508163-70560731	Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv900493	chr13:70508163-70578306	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv530606	chr13:70510296-70780461	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70525400-70533200	Weak transcription	Hela-S3	cervix
2	chr13:70530000-70533200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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