Variant report

Variant	rs17085833
Chromosome Location	chr13:70534184-70534185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs17085738	0.80[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs17085746	0.80[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs17085756	0.80[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs17085765	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs17085771	0.80[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs17085776	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs17085785	0.80[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs17085791	0.80[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs17085798	0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs17085809	0.80[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs17085818	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1888899	0.80[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs1888900	0.88[ASN][1000 genomes]
rs2150960	0.95[JPT][hapmap]
rs2210447	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs2210448	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs2210449	0.86[JPT][hapmap]
rs2210451	0.95[JPT][hapmap]
rs2210454	0.88[ASN][1000 genomes]
rs2482565	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs2875575	0.87[ASN][1000 genomes]
rs57111056	0.94[ASN][1000 genomes]
rs57793771	0.87[ASN][1000 genomes]
rs59082732	0.90[ASN][1000 genomes]
rs60869989	0.89[ASN][1000 genomes]
rs60954548	0.90[ASN][1000 genomes]
rs61159451	0.95[ASN][1000 genomes]
rs7319197	0.88[ASN][1000 genomes]
rs7325546	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs7325599	0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7337151	0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7337863	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs7338117	0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs73510191	0.84[ASN][1000 genomes]
rs73510192	0.88[ASN][1000 genomes]
rs73512608	0.88[ASN][1000 genomes]
rs73512626	0.89[ASN][1000 genomes]
rs7491419	0.88[ASN][1000 genomes]
rs8000924	0.90[JPT][hapmap]
rs9788409	0.80[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900487	chr13:70327693-70548643	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv530724	chr13:70393680-71164323	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1045918	chr13:70409675-70615997	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1038695	chr13:70484098-70654204	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900488	chr13:70487282-70560731	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900489	chr13:70487282-70578306	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv455966	chr13:70491038-70551029	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv562219	chr13:70491038-70551029	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv900490	chr13:70491038-70551029	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv900491	chr13:70499394-70578306	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv900492	chr13:70508163-70560731	Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv900493	chr13:70508163-70578306	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv530606	chr13:70510296-70780461	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70533200-70534200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr13:70533200-70534200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr13:70533200-70534200	Enhancers	Fetal Intestine Small	intestine
4	chr13:70533400-70534200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr13:70533400-70534600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr13:70533600-70535400	Weak transcription	Hela-S3	cervix
7	chr13:70533800-70534200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr13:70533800-70534400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:70534000-70535200	Weak transcription	Fetal Intestine Large	intestine
10	chr13:70534000-70538200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links