Variant report

Variant	rs2482565
Chromosome Location	chr13:70503389-70503390
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs17085570	1.00[CEU][hapmap]
rs17085738	0.90[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs17085746	0.90[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs17085756	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs17085765	0.90[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap]
rs17085771	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs17085776	0.90[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap]
rs17085785	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs17085791	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs17085798	0.86[CHB][hapmap]
rs17085809	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs17085818	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs17085833	0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs1888898	1.00[CEU][hapmap]
rs1888899	0.90[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs1888900	0.82[ASN][1000 genomes]
rs2150960	0.90[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap]
rs2210447	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs2210448	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2210449	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2210451	0.90[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap]
rs2210454	0.82[ASN][1000 genomes]
rs2325252	1.00[CEU][hapmap]
rs2875575	0.81[ASN][1000 genomes]
rs60869989	0.81[ASN][1000 genomes]
rs6562597	1.00[CEU][hapmap]
rs7319197	0.82[ASN][1000 genomes]
rs7319892	1.00[CEU][hapmap]
rs7325546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7325599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7337151	0.90[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs7337863	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs7338117	0.89[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs73510192	0.82[ASN][1000 genomes]
rs73512608	0.82[ASN][1000 genomes]
rs73512626	0.81[ASN][1000 genomes]
rs7491419	0.82[ASN][1000 genomes]
rs7985539	1.00[CEU][hapmap]
rs7990121	1.00[CEU][hapmap]
rs8000924	0.89[CHB][hapmap];0.82[CHD][hapmap];0.80[JPT][hapmap]
rs9564629	1.00[CEU][hapmap]
rs9564630	1.00[CEU][hapmap]
rs9572305	1.00[CEU][hapmap]
rs9788409	0.90[CHB][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900487	chr13:70327693-70548643	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv530724	chr13:70393680-71164323	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1045918	chr13:70409675-70615997	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1038695	chr13:70484098-70654204	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900488	chr13:70487282-70560731	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900489	chr13:70487282-70578306	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv455966	chr13:70491038-70551029	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv562219	chr13:70491038-70551029	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv900490	chr13:70491038-70551029	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv900491	chr13:70499394-70578306	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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