Variant report
| Variant | rs6562597 |
|---|---|
| Chromosome Location | chrX:91415872-91415873 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs11838952 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs17085570 | 1.00[CEU][hapmap] |
| rs1888898 | 1.00[CEU][hapmap] |
| rs2210447 | 1.00[CEU][hapmap] |
| rs2325252 | 1.00[CEU][hapmap] |
| rs2482565 | 1.00[CEU][hapmap] |
| rs7319892 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7325546 | 1.00[CEU][hapmap] |
| rs7325599 | 1.00[CEU][hapmap] |
| rs7985539 | 1.00[CEU][hapmap] |
| rs7990121 | 1.00[CEU][hapmap] |
| rs9564629 | 1.00[CEU][hapmap] |
| rs9564630 | 1.00[CEU][hapmap] |
| rs9572305 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432350 | chrX:91158935-91590765 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
