Variant report

Variant	rs1888898
Chromosome Location	chr13:70495268-70495269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17085568	1.00[JPT][hapmap]
rs17085570	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2210447	1.00[CEU][hapmap]
rs2325251	1.00[JPT][hapmap]
rs2325252	1.00[CEU][hapmap]
rs2482565	1.00[CEU][hapmap]
rs4883847	1.00[EUR][1000 genomes]
rs6562597	1.00[CEU][hapmap]
rs7319892	1.00[CEU][hapmap]
rs7325546	1.00[CEU][hapmap]
rs7325599	1.00[CEU][hapmap]
rs7328510	1.00[JPT][hapmap]
rs7332783	1.00[JPT][hapmap]
rs7985539	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7985990	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7990121	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs7995380	1.00[JPT][hapmap]
rs7995799	1.00[JPT][hapmap]
rs9529650	1.00[JPT][hapmap]
rs9564629	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9564630	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9572305	1.00[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv900487	chr13:70327693-70548643	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv530724	chr13:70393680-71164323	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1045918	chr13:70409675-70615997	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1038695	chr13:70484098-70654204	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900488	chr13:70487282-70560731	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv900489	chr13:70487282-70578306	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv455966	chr13:70491038-70551029	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv562219	chr13:70491038-70551029	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv900490	chr13:70491038-70551029	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70487600-70499000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:70494800-70495800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:70495000-70495400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:70495000-70495800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:70495200-70495600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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