Variant report

Variant	rs2911518
Chromosome Location	chr13:70424068-70424069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10507773	0.87[ASN][1000 genomes]
rs11618596	1.00[CHD][hapmap]
rs13378913	0.83[MKK][hapmap];0.88[YRI][hapmap]
rs1364378	0.87[ASN][1000 genomes]
rs1364380	0.82[AFR][1000 genomes]
rs1424311	0.87[ASN][1000 genomes]
rs17085438	1.00[CHD][hapmap];0.87[ASN][1000 genomes]
rs17085443	1.00[CHD][hapmap]
rs17085444	1.00[CHD][hapmap]
rs17085605	1.00[CHD][hapmap]
rs17085643	1.00[CHD][hapmap]
rs1991076	0.87[ASN][1000 genomes]
rs1991077	0.87[ASN][1000 genomes]
rs1991078	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2113357	1.00[CHD][hapmap]
rs2161756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2194362	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs2911504	1.00[CHD][hapmap]
rs2911506	1.00[CHD][hapmap]
rs2911519	1.00[CHD][hapmap]
rs2911521	0.87[ASN][1000 genomes]
rs2911522	0.87[ASN][1000 genomes]
rs2911523	0.87[ASN][1000 genomes]
rs3012107	1.00[CHD][hapmap]
rs3012108	1.00[CHD][hapmap];0.87[ASN][1000 genomes]
rs3012109	0.87[ASN][1000 genomes]
rs3012111	0.87[ASN][1000 genomes]
rs35457419	1.00[ASN][1000 genomes]
rs4531607	0.82[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap]
rs56286102	0.87[ASN][1000 genomes]
rs59297195	0.87[ASN][1000 genomes]
rs59334541	0.87[ASN][1000 genomes]
rs6562596	0.87[ASN][1000 genomes]
rs7335903	0.87[ASN][1000 genomes]
rs7337519	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.89[TSI][hapmap]
rs74092621	0.87[ASN][1000 genomes]
rs9529627	1.00[CHD][hapmap]
rs9592653	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv1837120	chr13:70209507-70425056	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv900483	chr13:70254555-70464234	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv832643	chr13:70324440-70486661	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv900487	chr13:70327693-70548643	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1041207	chr13:70347748-70473605	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv530724	chr13:70393680-71164323	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1045918	chr13:70409675-70615997	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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